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SGCD sarcoglycan delta [ Canis lupus dingo (dingo) ]

Gene ID: 112651975, updated on 15-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 4 NC_064246.1 (53695382..54612439, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 4 Unlocalized Scaffold NW_023365084.1 (53672279..54589229, complement)

Chromosome 4 - NC_064246.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC125754985 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC112651656 Neighboring gene uncharacterized LOC112651699

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064246.1 Reference ASM325472v2

    Range
    53695382..54612439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025435412.3 → XP_025291197.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025435413.3 → XP_025291198.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_025435411.3 → XP_025291196.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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