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SDC2 syndecan 2 [ Canis lupus dingo (dingo) ]

Gene ID: 112650672, updated on 15-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSCAFG00020009658
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 29
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 29 NC_064271.1 (41182871..41269608)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 29 Unlocalized Scaffold NW_023365223.1 (41241543..41329600)

Chromosome 29 - NC_064271.1Genomic Context describing neighboring genes Neighboring gene phosphatidylserine synthase 1 Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene uncharacterized LOC112650799 Neighboring gene uncharacterized LOC118352820 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC118352819 Neighboring gene uncharacterized LOC118352822

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064271.1 Reference ASM325472v2

    Range
    41182871..41269608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025433476.3 → XP_025289261.1  syndecan-2

    UniProtKB/TrEMBL
    A0A8C0TKX9
    Related
    ENSCAFP00020012006.1
    Conserved Domains (1) summary
    pfam01034
    Location:137 → 198
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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