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DEGS1 delta 4-desaturase, sphingolipid 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112648843, updated on 15-Mar-2024

Summary

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Gene symbol
DEGS1
Gene description
delta 4-desaturase, sphingolipid 1
See related
Ensembl:ENSCAFG00020003693
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DEGS1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 7 NC_064249.1 (39830265..39840315, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 7 Unlocalized Scaffold NW_023365116.1 (40723177..40733081, complement)

Chromosome 7 - NC_064249.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118355180 Neighboring gene ribosomal protein L18-like Neighboring gene uncharacterized LOC125755437 Neighboring gene F-box protein 28 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingolipid delta-4 desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingolipid delta(4)-desaturase DES1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064249.1 Reference ASM325472v2

    Range
    39830265..39840315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025430726.3 → XP_025286511.1  sphingolipid delta(4)-desaturase DES1

    UniProtKB/TrEMBL
    A0A8C0JSY9, A0A8C0SPX9, A0A8I3NE51
    Related
    ENSCAFP00020004473.1
    Conserved Domains (2) summary
    cd03508
    Location:26 → 315
    Delta4-sphingolipid-FADS-like; The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase ...
    pfam08557
    Location:7 → 42
    Lipid_DES; Sphingolipid Delta4-desaturase (DES)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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