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HS2ST1 heparan sulfate 2-O-sulfotransferase 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112640935, updated on 15-Mar-2024

Summary

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Gene symbol
HS2ST1
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSCAFG00020013749
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See HS2ST1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 6 NC_064248.1 (60939371..61113829, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 6 Unlocalized Scaffold NW_023365097.1 (61397230..61571331, complement)

Chromosome 6 - NC_064248.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118354919 Neighboring gene uncharacterized LOC125755328 Neighboring gene uncharacterized LOC112640937 Neighboring gene selenoprotein F Neighboring gene 60 kDa heat shock protein, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064248.1 Reference ASM325472v2

    Range
    60939371..61113829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025417750.3 → XP_025273535.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QDJ0
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 327
    Sulfotransfer_2; Sulfotransferase family

  2. XM_025417751.3 → XP_025273536.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KKM2, A0A8C0QDJ0, A0A8C0QL60, A0A8I3S128
    Related
    ENSCAFP00020017168.1
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 326
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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