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LOC112638046 lysine-specific demethylase 6A-like [ Camponotus floridanus (Florida carpenter ant) ]

Gene ID: 112638046, updated on 25-Jan-2024

Summary

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Gene symbol
LOC112638046
Gene description
lysine-specific demethylase 6A-like
See related
EnsemblRapid:LOC112638046
Gene type
protein coding
RefSeq status
MODEL
Organism
Camponotus floridanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
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Genomic context

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See LOC112638046 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229370.1 (1618715..1624766, complement)

NW_020229370.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105257003 Neighboring gene cysteine-rich PDZ-binding protein Neighboring gene uncharacterized LOC105257000 Neighboring gene ubiquitin-conjugating enzyme E2 N

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020229370 Unplaced Scaffold Reference Cflo_v7.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27me2/H3K27me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 6A-like; uncharacterized protein LOC112638046

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cflo_v7.5

Genomic

  1. NW_020229370.1 Reference Cflo_v7.5

    Range
    1618715..1624766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025409041.1 → XP_025264826.1  uncharacterized protein LOC112638046 isoform X1

    UniProtKB/TrEMBL
    E2AX55
    Related
    XP_025264826.1, XM_025409041.1
    Conserved Domains (3) summary
    pfam02373
    Location:260 → 368
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:226 → 290
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:768 → 877
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_025409042.1 → XP_025264827.1  lysine-specific demethylase 6A-like isoform X2

    Related
    XP_025264827.1, XM_025409042.1
    Conserved Domains (3) summary
    pfam02373
    Location:132 → 240
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:98 → 162
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:640 → 749
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein Strain
Heading Accession and Version

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