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HPAT5 human pluripotency-associated transcript 5 [ Homo sapiens (human) ]

Gene ID: 112590798, updated on 10-Oct-2023

Summary

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Gene symbol
HPAT5
Gene description
human pluripotency-associated transcript 5
See related
Ensembl:ENSG00000280707 MIM:616837
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167228300..167237512)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168610945..168620151)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (167641788..167651000)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene t-complex 10 like 2 (pseudogene) Neighboring gene uncharacterized LOC124901462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167619037-167619536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620021-167620522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620523-167621022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167621902-167622418 Neighboring gene unc-93 homolog A (C. elegans) pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167622419-167622933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25457 Neighboring gene Sharpr-MPRA regulatory region 9897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167634809-167635426 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167635427-167636043 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167637543-167638321 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167639317-167640118 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167641232-167641764 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:167645493-167645631 Neighboring gene uncharacterized LOC102724220 Neighboring gene uncharacterized LOC102725048 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167658429-167659398 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:167681138-167682337 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167693405-167693918 Neighboring gene unc-93 homolog A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167694745-167695246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167695247-167695746 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167701027-167701535 Neighboring gene Sharpr-MPRA regulatory region 7476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167707065-167707966 Neighboring gene Sharpr-MPRA regulatory region 10682 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167727314-167728288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming. Durruthy-Durruthy J, et al. Nat Genet, 2016 Jan. PMID 26595768, Free PMC Article
  2. Isolation of three kinds of human endogenous retrovirus-like sequences using tRNA(Pro) as a probe. Harada F, et al. Nucleic Acids Res, 1987 Nov 25. PMID 2825129, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353747
    Related
    ENST00000628362.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167228300..167237512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168610945..168620151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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