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SIRLNT SIRT1 regulating lncRNA tumor promoter [ Homo sapiens (human) ]

Gene ID: 112543493, updated on 10-Oct-2023

Summary

Official Symbol
SIRLNTprovided by HGNC
Official Full Name
SIRT1 regulating lncRNA tumor promoterprovided by HGNC
Primary source
HGNC:HGNC:53902
See related
Ensembl:ENSG00000253802 AllianceGenome:HGNC:53902
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncRNA-PRLB
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Genomic context

See SIRLNT in Genome Data Viewer
Location:
8p11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (40333173..40343363, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (40610082..40620272, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (40190692..40200882, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit beta pseudogene Neighboring gene Sharpr-MPRA regulatory region 3146 Neighboring gene indoleamine 2,3-dioxygenase 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:39908434-39908606 Neighboring gene HNF4 motif-containing MPRA enhancer 150 Neighboring gene uncharacterized LOC105379385 Neighboring gene HNF1 motif-containing MPRA enhancer 269 Neighboring gene NANOG hESC enhancer GRCh37_chr8:40077338-40077937 Neighboring gene transcriptional and immune response regulator Neighboring gene NANOG hESC enhancer GRCh37_chr8:40194220-40194743 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:40206788-40207987 Neighboring gene uncharacterized LOC105379388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:40404163-40404664 Neighboring gene zinc finger matrin-type 4 Neighboring gene uncharacterized LOC107986938

Genomic regions, transcripts, and products

General gene information

Other Names

  • CTA-392C11.1
  • progression-associated lncRNA in breast cancer

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_156738.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105999
    Related
    ENST00000521030.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    40333173..40343363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    40610082..40620272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)