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AMIGO3 adhesion molecule with Ig like domain 3 [ Gallus gallus (chicken) ]

Gene ID: 112533340, updated on 17-Aug-2024

Summary

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Symbol
AMIGO3provided by CGNC
Full Name
adhesion molecule with Ig like domain 3provided by CGNC
Primary source
CGNC:68418
See related
Ensembl:ENSGALG00010028208
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See AMIGO3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (2543860..2546157, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (2561469..2563754, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 7-like Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene ring finger protein 123 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene inositol hexakisphosphate kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphoterin-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2543860..2546157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025154610.3 → XP_025010378.2  amphoterin-induced protein 3

    UniProtKB/TrEMBL
    A0A8V1AI19
    Related
    ENSGALP00010042100.1, ENSGALT00010068357.1
    Conserved Domains (5) summary
    PRK15370
    Location:22 → 96
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00409
    Location:284 → 365
    IG; Immunoglobulin
    COG4886
    Location:48 → 169
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:181 → 219
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:41 → 57
    LRR_RI; leucine-rich repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2561469..2563754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681821.2 → XP_040537755.1  amphoterin-induced protein 3

    Conserved Domains (5) summary
    PRK15370
    Location:21 → 95
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00409
    Location:283 → 364
    IG; Immunoglobulin
    COG4886
    Location:47 → 168
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:180 → 218
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:40 → 56
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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