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LOC112522546 mediator of RNA polymerase II transcription subunit 23-like [ Cynara cardunculus subsp. cardunculus ]

Gene ID: 112522546, updated on 28-Jun-2024

Summary

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Gene symbol
LOC112522546
Gene description
mediator of RNA polymerase II transcription subunit 23-like
Locus tag
Ccrd_000208
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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Genomic context

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See LOC112522546 in Genome Data Viewer
Location:
chromosome: LG 12
Exon count:
22
Annotation release Status Assembly Chr Location
100 current CcrdV1 (GCF_001531365.1) LG 12 NC_037539.1 (2514186..2532320, complement)

Chromosome LG 12 - NC_037539.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112522410 Neighboring gene protein TIFY 7-like Neighboring gene glucan endo-1,3-beta-glucosidase 3-like Neighboring gene F-box protein SKIP28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037539.1 Chromosome LG 12 Reference CcrdV1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23-like
Names
Mediator complex, subunit Med23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CcrdV1

Genomic

  1. NC_037539.1 Reference CcrdV1

    Range
    2514186..2532320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025131741.1 → XP_024987509.1  mediator of RNA polymerase II transcription subunit 23-like isoform X2

    Conserved Domains (1) summary
    pfam11573
    Location:720 → 1329
    Med23; Mediator complex subunit 23

  2. XM_025131740.1 → XP_024987508.1  mediator of RNA polymerase II transcription subunit 23-like isoform X1

    UniProtKB/TrEMBL
    A0A118JXQ1
    Conserved Domains (1) summary
    pfam11573
    Location:760 → 1369
    Med23; Mediator complex subunit 23

  3. XM_025131742.1 → XP_024987510.1  mediator of RNA polymerase II transcription subunit 23-like isoform X3

    Conserved Domains (1) summary
    pfam11573
    Location:672 → 1281
    Med23; Mediator complex subunit 23

  4. XM_025131743.1 → XP_024987511.1  mediator of RNA polymerase II transcription subunit 23-like isoform X3

    Conserved Domains (1) summary
    pfam11573
    Location:672 → 1281
    Med23; Mediator complex subunit 23
Nucleotide Protein
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