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LOC112518440 sulfoquinovosyl transferase SQD2-like [ Cynara cardunculus subsp. cardunculus ]

Gene ID: 112518440, updated on 28-Jun-2024

Summary

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Gene symbol
LOC112518440
Gene description
sulfoquinovosyl transferase SQD2-like
Locus tag
Ccrd_003057
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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Genomic context

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See LOC112518440 in Genome Data Viewer
Location:
chromosome: LG 9
Exon count:
11
Annotation release Status Assembly Chr Location
100 current CcrdV1 (GCF_001531365.1) LG 9 NC_037536.1 (6618579..6625165)

Chromosome LG 9 - NC_037536.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate 2-O-acyltransferase 6 Neighboring gene BTB/POZ domain-containing protein At3g09030 Neighboring gene laccase-4-like Neighboring gene myb family transcription factor PHL7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037536.1 Chromosome LG 9 Reference CcrdV1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like
Names
Glycosyl transferase, family 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CcrdV1

Genomic

  1. NC_037536.1 Reference CcrdV1

    Range
    6618579..6625165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025126130.1 → XP_024981898.1  sulfoquinovosyl transferase SQD2-like isoform X1

    UniProtKB/TrEMBL
    A0A103XQ78
    Conserved Domains (1) summary
    PLN02871
    Location:46 → 501
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  2. XM_025126131.1 → XP_024981899.1  sulfoquinovosyl transferase SQD2-like isoform X2

    Conserved Domains (1) summary
    PLN02871
    Location:14 → 403
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
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