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LOC112515716 uncharacterized LOC112515716 [ Cynara cardunculus subsp. cardunculus ]

Gene ID: 112515716, updated on 28-Jun-2024

Summary

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Gene symbol
LOC112515716
Gene description
uncharacterized LOC112515716
Locus tag
Ccrd_012452
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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Genomic context

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See LOC112515716 in Genome Data Viewer
Location:
chromosome: LG 1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current CcrdV1 (GCF_001531365.1) LG 1 NC_037528.1 (12170548..12172072, complement)

Chromosome LG 1 - NC_037528.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY13-like Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1-like Neighboring gene uncharacterized LOC112524137 Neighboring gene phosphoserine aminotransferase, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037528.1 Chromosome LG 1 Reference CcrdV1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC112515716
Names
Glycosyl transferase, family 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CcrdV1

Genomic

  1. NC_037528.1 Reference CcrdV1

    Range
    12170548..12172072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025122627.1 → XP_024978395.1  uncharacterized protein LOC112515716

    UniProtKB/TrEMBL
    A0A103YHH4
    Conserved Domains (1) summary
    pfam04724
    Location:33 → 378
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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