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LOC112514158 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [ Cynara cardunculus subsp. cardunculus ]

Gene ID: 112514158, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112514158
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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Genomic context

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See LOC112514158 in Genome Data Viewer
Location:
chromosome: LG 6
Exon count:
2
Annotation release Status Assembly Chr Location
100 current CcrdV1 (GCF_001531365.1) LG 6 NC_037533.1 (12627698..12631821)

Chromosome LG 6 - NC_037533.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037533.1 Chromosome LG 6 Reference CcrdV1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CcrdV1

Genomic

  1. NC_037533.1 Reference CcrdV1

    Range
    12627698..12631821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025120490.1 → XP_024976258.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

    Conserved Domains (1) summary
    cd02537
    Location:163 → 408
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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