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TAF11L9 TATA-box binding protein associated factor 11 like 9 [ Homo sapiens (human) ]

Gene ID: 112488745, updated on 11-Apr-2024

Summary

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Official Symbol
TAF11L9provided by HGNC
Official Full Name
TATA-box binding protein associated factor 11 like 9provided by HGNC
Primary source
HGNC:HGNC:53852
See related
Ensembl:ENSG00000283988
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
5p15.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (17593798..17594394, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (17587878..17588474, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17593907..17594503, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17584965-17585902 Neighboring gene TATA-box binding protein associated factor 11 like 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17586840-17587776 Neighboring gene TATA-box binding protein associated factor 11 like 8 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17593527-17594202 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17594203-17594876 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17594877-17595552 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17597675-17598251 Neighboring gene TATA-box binding protein associated factor 11 like 10 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17598552-17599134 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17599135-17599717 Neighboring gene TATA-box binding protein associated factor 11 like 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome. Tremblay DC, et al. BMC Genomics, 2010 Nov 15. PMID 21078170, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
contributes_to RNA polymerase II general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TATA-box-binding protein-associated factor 11-like protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401693.1 → NP_001388622.1  TATA-box-binding protein-associated factor 11-like protein 9

    Status: INFERRED

    Source sequence(s)
    AC233724
    Consensus CDS
    CCDS93695.1
    UniProtKB/Swiss-Prot
    A0A1W2PR64
    Related
    ENSP00000492463.1, ENST00000639969.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    17593798..17594394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    17587878..17588474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1W2PR64.1 GenPept UniProtKB/Swiss-Prot:A0A1W2PR64

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases