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SCYGR1 small cysteine and glycine repeat containing 1 [ Homo sapiens (human) ]

Gene ID: 112441428, updated on 2-Nov-2024

Summary

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Official Symbol
SCYGR1provided by HGNC
Official Full Name
small cysteine and glycine repeat containing 1provided by HGNC
Primary source
HGNC:HGNC:34218
See related
Ensembl:ENSG00000284629 AllianceGenome:HGNC:34218
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KRTAP28-1
Summary
Predicted to be located in intermediate filament. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SCYGR1 in Genome Data Viewer
Location:
2q36.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (227387683..227387949, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (227870335..227870601, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (228252399..228252665, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitochondrial fission factor Neighboring gene stress induced phosphoprotein 1 pseudogene 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:228235290-228236489 Neighboring gene transmembrane 4 L six family member 20 Neighboring gene MPRA-validated peak4069 silencer Neighboring gene uncharacterized LOC124907993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17201 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17202 Neighboring gene uncharacterized LOC124907994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:228335785-228336748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small cysteine and glycine repeat-containing protein 1
Names
keratin associated protein 28-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395402.1 → NP_001382331.1  small cysteine and glycine repeat-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC097662
    Consensus CDS
    CCDS92952.1
    UniProtKB/Swiss-Prot
    A0A286YEY9
    Related
    ENSP00000493109.1, ENST00000641359.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    227387683..227387949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    227870335..227870601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A286YEY9.1 GenPept UniProtKB/Swiss-Prot:A0A286YEY9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials