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1700102P08Rik RIKEN cDNA 1700102P08 gene [ Mus musculus (house mouse) ]

Gene ID: 112418, updated on 2-Nov-2024

Summary

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Official Symbol
1700102P08Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700102P08 geneprovided by MGI
Primary source
MGI:MGI:2148248
See related
Ensembl:ENSMUSG00000032611 AllianceGenome:MGI:2148248
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Involved in spermatogenesis. Is expressed in spermatocyte and testis. Orthologous to human C3orf62 (chromosome 3 open reading frame 62). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 17.6) and CNS E18 (RPKM 0.8) See more
Orthologs
human all
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Genomic context

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See 1700102P08Rik in Genome Data Viewer
Location:
9 F2; 9 59.3 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108270023..108275416)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108392824..108411440)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25205 Neighboring gene STARR-positive B cell enhancer ABC_E10585 Neighboring gene glutathione peroxidase 1 Neighboring gene ubiquitin specific peptidase 4 (proto-oncogene) Neighboring gene ribosomal protein S2, pseudogene 11 Neighboring gene interactor of HORMAD1 1 Neighboring gene predicted gene, 25456 Neighboring gene cDNA sequence BC048562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The male pachynema-specific protein MAPS drives phase separation in vitro and regulates sex body formation and chromatin behaviors in vivo. Lin Z, et al. Cell Rep, 2024 Jan 23. PMID 38175751
  2. The testis-specific gene 1700102P08Rik is essential for male fertility. Wu XL, et al. Mol Reprod Dev, 2020 Feb. PMID 31930642
  3. The male germline-specific protein MAPS is indispensable for pachynema progression and fertility. Li M, et al. Proc Natl Acad Sci U S A, 2021 Feb 23. PMID 33602822, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The testis-specific gene 1700102P08Rik is essential for male fertility.
    Title: The testis-specific gene 1700102P08Rik is essential for male fertility.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C3orf62 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053216.3 → NP_444446.2  uncharacterized protein C3orf62 homolog

    See identical proteins and their annotated locations for NP_444446.2

    Status: VALIDATED

    Source sequence(s)
    AC161260
    Consensus CDS
    CCDS23524.1
    UniProtKB/Swiss-Prot
    A0A0R4J0D7, Q6P8V6, Q9D9C7
    Related
    ENSMUSP00000035234.5, ENSMUST00000035234.6
    Conserved Domains (1) summary
    pfam15830
    Location:1 → 247
    DUF4712; Domain of unknown function (DUF4712)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    108270023..108275416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511628.2 → XP_006511691.1  uncharacterized protein C3orf62 homolog isoform X1

    Conserved Domains (1) summary
    pfam15830
    Location:7 → 253
    DUF4712; Domain of unknown function (DUF4712)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9C7.2 GenPept UniProtKB/Swiss-Prot:Q9D9C7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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