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CHD8 chromodomain helicase DNA binding protein 8 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112410579, updated on 15-Mar-2024

Summary

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Gene symbol
CHD8
Gene description
chromodomain helicase DNA binding protein 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See CHD8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174924.1 (728056..785067, complement)

NW_020174924.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein C Neighboring gene RPGR interacting protein 1 Neighboring gene SPT16 homolog, facilitates chromatin remodeling subunit Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene RAB2B, member RAS oncogene family Neighboring gene TOX high mobility group box family member 4 Neighboring gene methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174924 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174924.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    728056..785067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024761259.1 → XP_024617027.1  chromodomain-helicase-DNA-binding protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A341CT66
    Conserved Domains (6) summary
    smart00592
    Location:2328 → 2368
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:644 → 704
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:724 → 777
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:490 → 584
    SR-25; Nuclear RNA-splicing-associated protein
    cl26464
    Location:68 → 280
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:810 → 1409
    SNF2_N; SNF2 family N-terminal domain

  2. XM_024761255.1 → XP_024617023.1  chromodomain-helicase-DNA-binding protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A341CQE0
    Conserved Domains (6) summary
    smart00592
    Location:2319 → 2363
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:644 → 704
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:724 → 777
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:490 → 584
    SR-25; Nuclear RNA-splicing-associated protein
    cl26464
    Location:68 → 280
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:810 → 1409
    SNF2_N; SNF2 family N-terminal domain

  3. XM_024761261.1 → XP_024617029.1  chromodomain-helicase-DNA-binding protein 8 isoform X5

    UniProtKB/TrEMBL
    A0A341CQR0
    Conserved Domains (5) summary
    smart00592
    Location:2040 → 2084
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:365 → 425
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:445 → 498
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:211 → 305
    SR-25; Nuclear RNA-splicing-associated protein
    cl26465
    Location:531 → 1130
    SNF2_N; SNF2 family N-terminal domain

  4. XM_024761257.1 → XP_024617025.1  chromodomain-helicase-DNA-binding protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A341CRS1
    Conserved Domains (6) summary
    smart00592
    Location:2294 → 2338
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:619 → 679
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:699 → 752
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:465 → 559
    SR-25; Nuclear RNA-splicing-associated protein
    cl26464
    Location:43 → 255
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:785 → 1384
    SNF2_N; SNF2 family N-terminal domain

  5. XM_024761260.1 → XP_024617028.1  chromodomain-helicase-DNA-binding protein 8 isoform X5

    UniProtKB/TrEMBL
    A0A341CQR0
    Conserved Domains (5) summary
    smart00592
    Location:2040 → 2084
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:365 → 425
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:445 → 498
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:211 → 305
    SR-25; Nuclear RNA-splicing-associated protein
    cl26465
    Location:531 → 1130
    SNF2_N; SNF2 family N-terminal domain

  6. XM_024761254.1 → XP_024617022.1  chromodomain-helicase-DNA-binding protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A341CQE0
    Conserved Domains (6) summary
    smart00592
    Location:2319 → 2363
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:644 → 704
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:724 → 777
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:490 → 584
    SR-25; Nuclear RNA-splicing-associated protein
    cl26464
    Location:68 → 280
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:810 → 1409
    SNF2_N; SNF2 family N-terminal domain

  7. XM_024761256.1 → XP_024617024.1  chromodomain-helicase-DNA-binding protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A341CQQ4
    Conserved Domains (6) summary
    smart00592
    Location:2311 → 2355
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:644 → 704
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:724 → 777
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam10500
    Location:490 → 584
    SR-25; Nuclear RNA-splicing-associated protein
    cl26464
    Location:68 → 280
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:810 → 1409
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
Heading Accession and Version

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