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CNTFR ciliary neurotrophic factor receptor [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112405483, updated on 15-Mar-2024

Summary

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Gene symbol
CNTFR
Gene description
ciliary neurotrophic factor receptor
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See CNTFR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174042.1 (2825822..2864294, complement)

NW_020174042.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene energy homeostasis associated Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene dynactin subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174042 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174042.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    2825822..2864294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024753906.1 → XP_024609674.1  ciliary neurotrophic factor receptor subunit alpha

    UniProtKB/TrEMBL
    A0A341C4A0
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_024753908.1 → XP_024609676.1  ciliary neurotrophic factor receptor subunit alpha

    UniProtKB/TrEMBL
    A0A341C4A0
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_024753907.1 → XP_024609675.1  ciliary neurotrophic factor receptor subunit alpha

    UniProtKB/TrEMBL
    A0A341C4A0
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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