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SDC4 syndecan 4 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112400889, updated on 15-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173393.1 (2005360..2025776)

NW_020173393.1Genomic Context describing neighboring genes Neighboring gene dysbindin domain containing 2 Neighboring gene TP53 target 5 Neighboring gene SYS1 golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4 Neighboring gene secretory leukocyte peptidase inhibitor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173393 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173393.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    2005360..2025776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024746867.1 → XP_024602635.1  syndecan-4

    UniProtKB/TrEMBL
    A0A341BIR2
    Conserved Domains (1) summary
    pfam01034
    Location:142 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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