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AKR1D1 aldo-keto reductase family 1 member D1 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112397453, updated on 2-May-2024

Summary

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Gene symbol
AKR1D1
Gene description
aldo-keto reductase family 1 member D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See AKR1D1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020172814.1 (357496..389216, complement)

NW_020172814.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 24 Neighboring gene RNA-binding protein with serine-rich domain 1 pseudogene Neighboring gene cAMP responsive element binding protein 3 like 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene diacylglycerol kinase iota

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020172814 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Delta4-3-oxosteroid 5beta-reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aldose reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ketosteroid monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-oxo-5-beta-steroid 4-dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020172814.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    357496..389216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024741644.1 → XP_024597412.1  3-oxo-5-beta-steroid 4-dehydrogenase isoform X1

    UniProtKB/TrEMBL
    A0A341B703
    Conserved Domains (1) summary
    cd19109
    Location:15 → 322
    AKR_AKR1D1-3; AKR1D family of aldo-keto reductase (AKR)

  2. XM_024741645.1 → XP_024597413.1  3-oxo-5-beta-steroid 4-dehydrogenase isoform X2

    UniProtKB/TrEMBL
    A0A341B6N4
    Conserved Domains (1) summary
    COG0656
    Location:9 → 268
    ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein
Heading Accession and Version

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