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ATP6V1A ATPase H+ transporting V1 subunit A [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112393208, updated on 15-Mar-2024

Summary

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Gene symbol
ATP6V1A
Gene description
ATPase H+ transporting V1 subunit A
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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See ATP6V1A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020185333.1 (1513975..1569531, complement)

NW_020185333.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 23 Neighboring gene GRAM domain containing 1C Neighboring gene U6 spliceosomal RNA Neighboring gene N-alpha-acetyltransferase 50, NatE catalytic subunit Neighboring gene upstream transcription factor family member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185333 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase catalytic subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020185333.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1513975..1569531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024735318.1 → XP_024591086.1  V-type proton ATPase catalytic subunit A

    UniProtKB/TrEMBL
    A0A341AK32
    Conserved Domains (1) summary
    TIGR01042
    Location:18 → 610
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

  2. XM_024735319.1 → XP_024591087.1  V-type proton ATPase catalytic subunit A

    UniProtKB/TrEMBL
    A0A341AK32
    Conserved Domains (1) summary
    TIGR01042
    Location:18 → 610
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

RNA

  1. XR_003001863.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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