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HSPG2 heparan sulfate proteoglycan 2 [ Desmodus rotundus (common vampire bat) ]

Gene ID: 112299193, updated on 30-Mar-2024

Summary

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Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Desmodus rotundus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
Orthologs
human mouse all
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Genomic context

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See HSPG2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
103
Annotation release Status Assembly Chr Location
RS_2023_02 current HLdesRot8A (GCF_022682495.1) 3 NC_071389.1 (12857263..12952417, complement)
101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020090861.1 (13742930..13837937, complement)

Chromosome 3 - NC_071389.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128780430 Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene proproteinase E-like Neighboring gene uncharacterized LOC123479149

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HLdesRot8A Primary Assembly

Genomic

  1. NC_071389.1 Reference HLdesRot8A Primary Assembly

    Range
    12857263..12952417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053920250.1 → XP_053776225.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X9

  2. XM_053920248.1 → XP_053776223.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X7

  3. XM_053920249.1 → XP_053776224.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X8

  4. XM_053920247.1 → XP_053776222.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X6

  5. XM_053920245.1 → XP_053776220.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X4

  6. XM_053920251.1 → XP_053776226.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X10

  7. XM_053920246.1 → XP_053776221.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X5

  8. XM_053920243.1 → XP_053776218.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X2

  9. XM_053920244.1 → XP_053776219.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X3

  10. XM_053920242.1 → XP_053776217.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X1

Nucleotide Protein
Heading Accession and Version

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