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LOC112288309 ABC transporter C family member 8-like [ Physcomitrium patens ]

Gene ID: 112288309, updated on 20-Sep-2024

Summary

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Gene symbol
LOC112288309
Gene description
ABC transporter C family member 8-like
Locus tag
PHYPA_001264
Gene type
protein coding
RefSeq status
MODEL
Organism
Physcomitrium patens
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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Genomic context

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See LOC112288309 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Phypa V3 (GCF_000002425.4) 1 NC_037253.1 (19909201..19918461, complement)

Chromosome 1 - NC_037253.1Genomic Context describing neighboring genes Neighboring gene protein OS-9 homolog Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase-like Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP12-like Neighboring gene uncharacterized LOC112275042 Neighboring gene delta(12)-acyl-lipid-desaturase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037253.1 Chromosome 1 Reference Phypa V3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuolar membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter C family member 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Phypa V3 Primary Assembly

Genomic

  1. NC_037253.1 Reference Phypa V3 Primary Assembly

    Range
    19909201..19918461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024532391.1 → XP_024388159.1  ABC transporter C family member 8-like

    UniProtKB/TrEMBL
    A0A2K1L9Z0
    Conserved Domains (1) summary
    cl26602
    Location:264 → 1503
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  2. XM_024532400.1 → XP_024388168.1  ABC transporter C family member 8-like

    UniProtKB/TrEMBL
    A0A2K1L9Z0
    Conserved Domains (1) summary
    cl26602
    Location:264 → 1503
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Nucleotide Protein
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