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LOC112262084 mitochondrial basic amino acids transporter [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112262084, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112262084
Gene description
mitochondrial basic amino acids transporter
See related
Ensembl:ENSOTSG00005043791
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112262084 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
6
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG11 NC_056439.1 (47089874..47100326, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 11 NC_037107.1 (43341984..43352289, complement)

Linkage Group LG11 - NC_056439.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112262350 Neighboring gene heme-binding protein 1 Neighboring gene solute carrier family 25 member 47b Neighboring gene tryptophanyl-tRNA synthetase 1 Neighboring gene brain-enriched guanylate kinase-associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056439.1 Reference Otsh_v2.0 Primary Assembly

    Range
    47089874..47100326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024437778.2 → XP_024293546.1  mitochondrial basic amino acids transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C8JIT7, A0A8C8JJC9
    Related
    ENSOTSP00005093867.1, ENSOTST00005101759.2
    Conserved Domains (1) summary
    pfam00153
    Location:90 → 186
    Mito_carr; Mitochondrial carrier protein

  2. XM_024437779.2 → XP_024293547.1  mitochondrial basic amino acids transporter isoform X2

    UniProtKB/TrEMBL
    A0A8C8JIT7, A0A8C8JLG7
    Related
    ENSOTSP00005093868.1, ENSOTST00005101760.2
    Conserved Domains (2) summary
    pfam00153
    Location:77 → 173
    Mito_carr; Mitochondrial carrier protein
    cl28162
    Location:16 → 68
    Mito_carr; Mitochondrial carrier protein

  3. XM_024437784.2 → XP_024293552.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8C8JIT7
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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