U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112261305 polypeptide N-acetylgalactosaminyltransferase-like 6 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112261305, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC112261305
Gene description
polypeptide N-acetylgalactosaminyltransferase-like 6
See related
Ensembl:ENSOTSG00005015099
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112261305 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
13
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG11 NC_056439.1 (2805774..3076049)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 11 NC_037107.1 (3545968..3832608)

Linkage Group LG11 - NC_056439.1Genomic Context describing neighboring genes Neighboring gene F-box/WD repeat-containing protein 7 Neighboring gene transmembrane protein 154 Neighboring gene N-acetylgalactosaminyltransferase 7-like Neighboring gene F-box only protein 8

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056439.1 Reference Otsh_v2.0 Primary Assembly

    Range
    2805774..3076049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024436568.2 → XP_024292336.2  polypeptide N-acetylgalactosaminyltransferase-like 6

    UniProtKB/TrEMBL
    A0A8C8FC39
    Related
    ENSOTSP00005032078.2, ENSOTST00005034761.2
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:457 → 584
    RICIN; Ricin-type beta-trefoil

  2. XM_042329689.1 → XP_042185623.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    UniProtKB/TrEMBL
    A0A8C8FC39
    Related
    ENSOTSP00005032112.2, ENSOTST00005034795.2
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:457 → 584
    RICIN; Ricin-type beta-trefoil
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases