U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

kirrel1b kirre like nephrin family adhesion molecule 1b [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112259656, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
Ensembl:ENSOTSG00005033514
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See kirrel1b in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
15
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG10 NC_056438.1 (74827899..74917515)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 10 NC_037106.1 (57432899..57450964)

Linkage Group LG10 - NC_056438.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 3 Neighboring gene uncharacterized LOC121847509 Neighboring gene NACHT, LRR and PYD domains-containing protein 1 homolog Neighboring gene SLAM family member 5-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
kin of IRRE-like protein 1b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056438.1 Reference Otsh_v2.0 Primary Assembly

    Range
    74827899..74917515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042329061.1 → XP_042184995.1  kin of IRRE-like protein 1b

    Related
    ENSOTSP00005070810.2, ENSOTST00005076845.2
    Conserved Domains (4) summary
    smart00409
    Location:315 → 390
    IG; Immunoglobulin
    PRK14086
    Location:696 → 847
    dnaA; chromosomal replication initiator protein DnaA
    cd00096
    Location:410 → 414
    Ig; Ig strand B [structural motif]
    cl11960
    Location:392 → 495
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases