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LOC112259141 kin of IRRE-like protein 3 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112259141, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112259141
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSOTSG00005014293
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112259141 in Genome Data Viewer
Location:
chromosome: LG09
Exon count:
16
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG09 NC_056437.1 (49018650..49159425)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 9 NC_037105.1 (45731038..45871629)

Linkage Group LG09 - NC_056437.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 263-like Neighboring gene ATP-sensitive inward rectifier potassium channel 1-like Neighboring gene CXADR-like membrane protein Neighboring gene protein Aster-B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056437.1 Reference Otsh_v2.0 Primary Assembly

    Range
    49018650..49159425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024433889.1 → XP_024289657.1  kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A8C8HKW4
    Related
    ENSOTSP00005034774.1, ENSOTST00005037723.2
    Conserved Domains (5) summary
    cd05759
    Location:123 → 204
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:376 → 473
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:12 → 101
    IG_like; Immunoglobulin like
    pfam13895
    Location:212 → 289
    Ig_2; Immunoglobulin domain
    cl28434
    Location:293 → 374
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
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