U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112256371 C1GALT1-specific chaperone 1 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112256371, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC112256371
Gene description
C1GALT1-specific chaperone 1
See related
Ensembl:ENSOTSG00005001178
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112256371 in Genome Data Viewer
Location:
chromosome: LG08
Exon count:
2
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG08 NC_056436.1 (49607149..49610335, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 8 NC_037104.1 (31275698..31278953)

Linkage Group LG08 - NC_056436.1Genomic Context describing neighboring genes Neighboring gene lysosome-associated membrane glycoprotein 2 Neighboring gene cullin-4B Neighboring gene urotensin-related peptide 1 Neighboring gene chloride intracellular channel 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056436.1 Reference Otsh_v2.0 Primary Assembly

    Range
    49607149..49610335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024429579.2 → XP_024285347.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A8C8BZ20
    Related
    ENSOTSP00005147789.1, ENSOTST00005155817.1

  2. XM_024429578.2 → XP_024285346.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A8C8BZ20
    Related
    ENSOTSP00005131608.1, ENSOTST00005143484.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases