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LOC112252994 heparan sulfate glucosamine 3-O-sulfotransferase 1-like [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112252994, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112252994
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 1-like
See related
Ensembl:ENSOTSG00005064475
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112252994 in Genome Data Viewer
Location:
chromosome: LG01
Exon count:
2
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG01 NC_056429.1 (52113153..52193898)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 1 NC_037097.1 (51214825..51293593)

Linkage Group LG01 - NC_056429.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 518A Neighboring gene B-cell linker protein Neighboring gene DNA nucleotidylexotransferase Neighboring gene uncharacterized LOC121847464 Neighboring gene kinase non-catalytic C-lobe domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056429.1 Reference Otsh_v2.0 Primary Assembly

    Range
    52113153..52193898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024424837.2 → XP_024280605.1  heparan sulfate glucosamine 3-O-sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A8C8GTE2
    Related
    ENSOTSP00005142266.1, ENSOTST00005190820.1
    Conserved Domains (1) summary
    cl21551
    Location:49 → 250
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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