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LOC112251454 torsin-1A-interacting protein 2 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112251454, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112251454
Gene description
torsin-1A-interacting protein 2
See related
Ensembl:ENSOTSG00005020331
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112251454 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
5
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG05 NC_056433.1 (83447546..83454318)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 5 NC_037101.1 (89295892..89302870)

Linkage Group LG05 - NC_056433.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112251450 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056433.1 Reference Otsh_v2.0 Primary Assembly

    Range
    83447546..83454318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042322558.1 → XP_042178492.1  torsin-1A-interacting protein 2

    Related
    ENSOTSP00005042270.2, ENSOTST00005045974.2
    Conserved Domains (1) summary
    PRK08581
    Location:12 → 166
    PRK08581; amidase domain-containing protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases