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LOC112251452 torsin-1A-interacting protein 2 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112251452, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112251452
Gene description
torsin-1A-interacting protein 2
See related
Ensembl:ENSOTSG00005020327
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112251452 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
8
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG05 NC_056433.1 (83430057..83434847, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 5 NC_037101.1 (89280274..89285066, complement)

Linkage Group LG05 - NC_056433.1Genomic Context describing neighboring genes Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC112251450 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056433.1 Reference Otsh_v2.0 Primary Assembly

    Range
    83430057..83434847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024422425.2 → XP_024278193.1  torsin-1A-interacting protein 2 isoform X2

    Related
    ENSOTSP00005042268.2, ENSOTST00005045969.2
    Conserved Domains (1) summary
    pfam05609
    Location:323 → 539
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_024422424.2 → XP_024278192.1  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C8G372
    Related
    ENSOTSP00005120238.1, ENSOTST00005167876.1
    Conserved Domains (1) summary
    pfam05609
    Location:324 → 540
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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Gene LinkOut

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