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LOC112250540 mitochondrial basic amino acids transporter [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112250540, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112250540
Gene description
mitochondrial basic amino acids transporter
See related
Ensembl:ENSOTSG00005004399
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112250540 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
7
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG05 NC_056433.1 (34670752..34684343)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 5 NC_037101.1 (40174126..40187952, complement)

Linkage Group LG05 - NC_056433.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit Neighboring gene thyroxine 5-deiodinase-like Neighboring gene alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase Neighboring gene 40S ribosomal protein S29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056433.1 Reference Otsh_v2.0 Primary Assembly

    Range
    34670752..34684343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024420780.2 → XP_024276548.1  mitochondrial basic amino acids transporter isoform X1

    UniProtKB/TrEMBL
    A0A8C8M755
    Related
    ENSOTSP00005007953.2, ENSOTST00005008772.2
    Conserved Domains (1) summary
    pfam00153
    Location:86 → 177
    Mito_carr; Mitochondrial carrier protein

  2. XM_024420783.2 → XP_024276551.1  mitochondrial basic amino acids transporter isoform X2

    Conserved Domains (1) summary
    pfam00153
    Location:34 → 125
    Mito_carr; Mitochondrial carrier protein

  3. XM_024420781.2 → XP_024276549.1  mitochondrial basic amino acids transporter isoform X2

    Conserved Domains (1) summary
    pfam00153
    Location:34 → 125
    Mito_carr; Mitochondrial carrier protein

  4. XM_024420784.2 → XP_024276552.1  mitochondrial basic amino acids transporter isoform X2

    Conserved Domains (1) summary
    pfam00153
    Location:34 → 125
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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