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lman2lb lectin, mannose-binding 2-like b [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112248685, updated on 19-Jun-2024

Summary

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Gene symbol
lman2lb
Gene description
lectin, mannose-binding 2-like b
See related
Ensembl:ENSOTSG00005055897
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See lman2lb in Genome Data Viewer
Location:
chromosome: LG04
Exon count:
9
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG04 NC_056432.1 (38914350..38919803)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 4 NC_037100.1 (36489969..36495422)

Linkage Group LG04 - NC_056432.1Genomic Context describing neighboring genes Neighboring gene HtrA serine peptidase 4 Neighboring gene TM2 domain containing 2 Neighboring gene T-box transcription factor 3b Neighboring gene leukocyte surface antigen CD53-like Neighboring gene leukocyte surface antigen CD53-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lectin, mannose-binding 2-like b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056432.1 Reference Otsh_v2.0 Primary Assembly

    Range
    38914350..38919803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024417922.1 → XP_024273690.1  lectin, mannose-binding 2-like b isoform X2

    UniProtKB/TrEMBL
    A0A8C8H3I3, A0A8C8H4F4
    Conserved Domains (1) summary
    cl14058
    Location:57 → 303
    lectin_L-type; legume lectins

  2. XM_024417921.2 → XP_024273689.1  lectin, mannose-binding 2-like b isoform X1

    UniProtKB/TrEMBL
    A0A8C8H4F4, A0A8C8M2H5
    Related
    ENSOTSP00005138505.1, ENSOTST00005142720.1
    Conserved Domains (1) summary
    cl14058
    Location:57 → 311
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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