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LOC112241717 calpain-3-like [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112241717, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112241717
Gene description
calpain-3-like
See related
Ensembl:ENSOTSG00005072055
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG11
Exon count:
21
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG11 NC_056439.1 (54444647..54497460)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020131813.1 (4286..23565, complement)

Linkage Group LG11 - NC_056439.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 16-like Neighboring gene vam6/Vps39-like protein Neighboring gene WD repeat domain 32 Neighboring gene ubiquitin-conjugating enzyme E2 D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056439.1 Reference Otsh_v2.0 Primary Assembly

    Range
    54444647..54497460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042330374.1 → XP_042186308.1  calpain-3-like

    Related
    ENSOTSP00005142726.1, ENSOTST00005148279.1
    Conserved Domains (4) summary
    smart00230
    Location:37 → 361
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:363 → 520
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 713
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases