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LOC112235016 methyltransferase-like protein 23 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112235016, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112235016
Gene description
methyltransferase-like protein 23
See related
Ensembl:ENSOTSG00005037671
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112235016 in Genome Data Viewer
Location:
chromosome: LG09
Exon count:
5
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG09 NC_056437.1 (82684459..82686330)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020128858.1 (2231956..2233348)

Linkage Group LG09 - NC_056437.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF12-B Neighboring gene bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 Neighboring gene serine/arginine-rich splicing factor 2 Neighboring gene UNC93-like protein MFSD11 Neighboring gene glutamine-rich protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyltransferase-like protein 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056437.1 Reference Otsh_v2.0 Primary Assembly

    Range
    82684459..82686330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024403407.2 → XP_024259175.1  methyltransferase-like protein 23

    UniProtKB/TrEMBL
    A0A8C8IIV5, A0A8C8MCR6
    Related
    ENSOTSP00005080086.2, ENSOTST00005086798.2
    Conserved Domains (1) summary
    cl17173
    Location:41 → 177
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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