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LOC112233084 plectin [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112233084, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112233084
Gene description
plectin
See related
Ensembl:ENSOTSG00005001848
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112233084 in Genome Data Viewer
Location:
chromosome: LG03
Exon count:
38
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG03 NC_056431.1 (27169209..27265142, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 3 NC_037099.1 (29886094..30046929)

Linkage Group LG03 - NC_056431.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2 Neighboring gene microtubule-actin cross-linking factor 1 Neighboring gene nuclear factor 7, brain-like Neighboring gene R-spondin-2-like Neighboring gene eukaryotic translation initiation factor 3 subunit E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056431.1 Reference Otsh_v2.0 Primary Assembly

    Range
    27169209..27265142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042313382.1 → XP_042169316.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A8C8C454
    Conserved Domains (6) summary
    PTZ00121
    Location:2279 → 2971
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4930 → 4966
    PLEC; Plectin repeat
    PHA03247
    Location:103 → 729
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1245
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1502 → 1691
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  2. XM_042313377.1 → XP_042169311.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A8C8BZW7
    Conserved Domains (6) summary
    PTZ00121
    Location:2284 → 2976
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4935 → 4971
    PLEC; Plectin repeat
    PHA03247
    Location:103 → 729
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1250
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1507 → 1696
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  3. XM_042313373.1 → XP_042169307.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A8C8BZW7
    Conserved Domains (6) summary
    PTZ00121
    Location:2288 → 2980
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4939 → 4975
    PLEC; Plectin repeat
    PHA03247
    Location:103 → 729
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1262
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1511 → 1700
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  4. XM_024400523.2 → XP_024256291.2  plectin isoform X5

    UniProtKB/TrEMBL
    A0A8C8CE67
    Related
    ENSOTSP00005003649.2, ENSOTST00005004055.2
    Conserved Domains (6) summary
    PTZ00121
    Location:2260 → 2952
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4911 → 4947
    PLEC; Plectin repeat
    PHA03247
    Location:103 → 729
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1490 → 1679
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  5. XM_024400502.2 → XP_024256270.2  plectin isoform X4

    UniProtKB/TrEMBL
    A0A8C8BXE2
    Conserved Domains (6) summary
    PTZ00121
    Location:2277 → 2969
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4928 → 4964
    PLEC; Plectin repeat
    PHA03247
    Location:103 → 729
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1258
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1507 → 1696
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  6. XM_024400544.2 → XP_024256312.2  plectin isoform X7

    UniProtKB/TrEMBL
    A0A8C8EKZ4
    Related
    ENSOTSP00005003585.2, ENSOTST00005003980.2
    Conserved Domains (4) summary
    PTZ00121
    Location:1393 → 2085
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4044 → 4080
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  7. XM_024400540.2 → XP_024256308.2  plectin isoform X6

    UniProtKB/TrEMBL
    A0A8C8C3A9
    Related
    ENSOTSP00005003753.2, ENSOTST00005004170.2
    Conserved Domains (4) summary
    PTZ00121
    Location:1400 → 2092
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4051 → 4087
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
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