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LOC112228555 polypeptide N-acetylgalactosaminyltransferase 10 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112228555, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112228555
Gene description
polypeptide N-acetylgalactosaminyltransferase 10
See related
Ensembl:ENSOTSG00005024118
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
galnt10
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Genomic context

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See LOC112228555 in Genome Data Viewer
Location:
chromosome: LG30
Exon count:
13
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG30 NC_056458.1 (23146900..23229603, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 30 NC_037126.1 (21561509..21644313)

Linkage Group LG30 - NC_056458.1Genomic Context describing neighboring genes Neighboring gene flotillin-2a Neighboring gene uncharacterized LOC112228558 Neighboring gene dehydrogenase/reductase SDR family member 11 Neighboring gene protein FAM114A2 Neighboring gene CCR4-NOT transcription complex, subunit 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056458.1 Reference Otsh_v2.0 Primary Assembly

    Range
    23146900..23229603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024393964.2 → XP_024249732.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A8C8GJ07, A0A8C8IJY8
    Related
    ENSOTSP00005050040.1, ENSOTST00005054400.2
    Conserved Domains (2) summary
    cd02510
    Location:149 → 444
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:460 → 588
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_042309272.1 → XP_042165206.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X2

    UniProtKB/TrEMBL
    A0A8C8IJY8
    Conserved Domains (2) summary
    cd02510
    Location:32 → 327
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:351 → 474
    RICIN; Ricin-type beta-trefoil
Nucleotide Protein
Heading Accession and Version

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