U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112228549 delta-sarcoglycan [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112228549, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC112228549
Gene description
delta-sarcoglycan
See related
Ensembl:ENSOTSG00005023097
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112228549 in Genome Data Viewer
Location:
chromosome: LG30
Exon count:
8
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG30 NC_056458.1 (23890867..23991767)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 30 NC_037126.1 (20780196..20868631, complement)

Linkage Group LG30 - NC_056458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112228550 Neighboring gene uncharacterized LOC112228109 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056458.1 Reference Otsh_v2.0 Primary Assembly

    Range
    23890867..23991767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024393958.2 → XP_024249726.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C8LWM3
    Related
    ENSOTSP00005153276.1, ENSOTST00005195912.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases