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kirrel3a kirre like nephrin family adhesion molecule 3a [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112228338, updated on 18-Jun-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
See related
Ensembl:ENSOTSG00005020579
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: LG30
Exon count:
16
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG30 NC_056458.1 (35735308..36014335)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 30 NC_037126.1 (8442781..8717947, complement)

Linkage Group LG30 - NC_056458.1Genomic Context describing neighboring genes Neighboring gene protein c-ets-1-B Neighboring gene somatolactin beta Neighboring gene CXADR-like membrane protein Neighboring gene small fragment nuclease

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056458.1 Reference Otsh_v2.0 Primary Assembly

    Range
    35735308..36014335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024393565.2 → XP_024249333.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C8HKW4
    Conserved Domains (5) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:392 → 489
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    pfam13895
    Location:225 → 302
    Ig_2; Immunoglobulin domain
    cl28434
    Location:306 → 390
    I-set; Immunoglobulin I-set domain

  2. XM_024393566.2 → XP_024249334.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C8HKW4
    Related
    ENSOTSP00005042795.2, ENSOTST00005046562.2
    Conserved Domains (5) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:389 → 486
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13895
    Location:225 → 302
    Ig_2; Immunoglobulin domain
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
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