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LOC112226908 dnaJ homolog subfamily B member 6 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112226908, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112226908
Gene description
dnaJ homolog subfamily B member 6
See related
Ensembl:ENSOTSG00005020831
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112226908 in Genome Data Viewer
Location:
chromosome: LG28
Exon count:
11
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG28 NC_056456.1 (21114194..21129262, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 28 NC_037124.1 (20065788..20081016, complement)

Linkage Group LG28 - NC_056456.1Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 10-B Neighboring gene potassium voltage-gated channel subfamily B member 2-like Neighboring gene transient receptor potential cation channel subfamily A member 1 Neighboring gene tiggy-winkle hedgehog protein-like Neighboring gene protein canopy-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056456.1 Reference Otsh_v2.0 Primary Assembly

    Range
    21114194..21129262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024391571.2 → XP_024247339.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C8G0P6
    Related
    ENSOTSP00005135928.1, ENSOTST00005188820.1
    Conserved Domains (1) summary
    PRK10767
    Location:4 → 139
    PRK10767; chaperone protein DnaJ; Provisional

  2. XM_024391572.2 → XP_024247340.1  dnaJ homolog subfamily B member 6 isoform X2

    Related
    ENSOTSP00005043199.2, ENSOTST00005047008.2
    Conserved Domains (1) summary
    cl28246
    Location:4 → 139
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_024391573.2 → XP_024247341.1  dnaJ homolog subfamily B member 6 isoform X3

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 139
    PRK10767; chaperone protein DnaJ; Provisional
Nucleotide Protein
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