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LOC112223137 plectin [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112223137, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112223137
Gene description
plectin
See related
Ensembl:ENSOTSG00005011545
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112223137 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
41
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG23 NC_056451.1 (3558865..3741088)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 23 NC_037119.1 (19313506..19494070, complement)

Linkage Group LG23 - NC_056451.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit E Neighboring gene R-spondin-2 Neighboring gene microtubule-actin cross-linking factor 1 Neighboring gene E3 ubiquitin-protein ligase TRIM35 Neighboring gene riboflavin transporter 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056451.1 Reference Otsh_v2.0 Primary Assembly

    Range
    3558865..3741088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042304453.1 → XP_042160387.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Related
    ENSOTSP00005010852.2, ENSOTST00005011969.2
    Conserved Domains (5) summary
    PTZ00121
    Location:1333 → 2126
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4082 → 4118
    PLEC; Plectin repeat
    COG5069
    Location:72 → 415
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:657 → 846
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1166 → 1340
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  2. XM_024386140.2 → XP_024241908.2  plectin isoform X8

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Related
    ENSOTSP00005010879.2, ENSOTST00005011996.2
    Conserved Domains (5) summary
    PTZ00121
    Location:1314 → 2107
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4063 → 4099
    PLEC; Plectin repeat
    COG5069
    Location:72 → 403
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:645 → 834
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1147 → 1321
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  3. XM_042304455.1 → XP_042160389.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Related
    ENSOTSP00005024527.2, ENSOTST00005026522.2
    Conserved Domains (5) summary
    PTZ00121
    Location:1296 → 2089
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4045 → 4081
    PLEC; Plectin repeat
    COG5069
    Location:35 → 378
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 809
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1129 → 1303
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_042304456.1 → XP_042160390.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Conserved Domains (5) summary
    PTZ00121
    Location:1291 → 2084
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4040 → 4076
    PLEC; Plectin repeat
    COG5069
    Location:35 → 373
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:615 → 804
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1124 → 1298
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  5. XM_042304448.1 → XP_042160382.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A8C8ET40
    Conserved Domains (6) summary
    PTZ00121
    Location:2165 → 2958
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4914 → 4950
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1247
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1489 → 1678
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1998 → 2172
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  6. XM_042304449.1 → XP_042160383.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A8C8ET40
    Conserved Domains (6) summary
    PTZ00121
    Location:2165 → 2958
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4914 → 4950
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1247
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1489 → 1678
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1998 → 2172
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  7. XM_042304450.1 → XP_042160384.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A8C8ET40
    Conserved Domains (6) summary
    PTZ00121
    Location:2160 → 2953
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4909 → 4945
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1242
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1484 → 1673
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1993 → 2167
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  8. XM_042304451.1 → XP_042160385.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A8C8ET40
    Related
    ENSOTSP00005107324.1, ENSOTST00005191697.1
    Conserved Domains (6) summary
    PTZ00121
    Location:2158 → 2951
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4907 → 4943
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1247
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1489 → 1678
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1991 → 2165
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  9. XM_024386124.2 → XP_024241892.2  plectin isoform X4

    UniProtKB/TrEMBL
    A0A8C8ET40
    Conserved Domains (6) summary
    PTZ00121
    Location:2153 → 2946
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4902 → 4938
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1235
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1477 → 1666
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1986 → 2160
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  10. XM_024386126.2 → XP_024241894.2  plectin isoform X5

    UniProtKB/TrEMBL
    A0A8C8ET40
    Conserved Domains (6) summary
    PTZ00121
    Location:2148 → 2941
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4897 → 4933
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1230
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1472 → 1661
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1981 → 2155
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  11. XM_042304452.1 → XP_042160386.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0A8C8ET40
    Related
    ENSOTSP00005024488.2, ENSOTST00005026482.2
    Conserved Domains (6) summary
    PTZ00121
    Location:2141 → 2934
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4890 → 4926
    PLEC; Plectin repeat
    COG5069
    Location:899 → 1230
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1472 → 1661
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:1974 → 2148
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  12. XM_042304460.1 → XP_042160394.1  plectin isoform X16

    Conserved Domains (8) summary
    smart00250
    Location:3799 → 3835
    PLEC; Plectin repeat
    PHA03369
    Location:316 → 604
    PHA03369; capsid maturational protease; Provisional
    COG0810
    Location:429 → 542
    TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
    COG1196
    Location:1981 → 2330
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:899 → 1247
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2273 → 2453
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1489 → 1678
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:7 → 116
    S10_plectin; Plectin/S10 domain

  13. XM_042304458.1 → XP_042160392.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Conserved Domains (5) summary
    PTZ00121
    Location:1271 → 2064
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4020 → 4056
    PLEC; Plectin repeat
    COG5069
    Location:10 → 353
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:595 → 784
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1104 → 1278
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  14. XM_042304459.1 → XP_042160393.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Related
    ENSOTSP00005024490.2, ENSOTST00005026484.2
    Conserved Domains (5) summary
    PTZ00121
    Location:1266 → 2059
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4015 → 4051
    PLEC; Plectin repeat
    COG5069
    Location:10 → 348
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:590 → 779
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1099 → 1273
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  15. XM_042304454.1 → XP_042160388.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Conserved Domains (5) summary
    PTZ00121
    Location:1304 → 2097
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4053 → 4089
    PLEC; Plectin repeat
    COG5069
    Location:48 → 386
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:628 → 817
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1137 → 1311
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  16. XM_024386132.2 → XP_024241900.2  plectin isoform X11

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Conserved Domains (5) summary
    PTZ00121
    Location:1292 → 2085
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4041 → 4077
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:616 → 805
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1125 → 1299
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  17. XM_024386141.2 → XP_024241909.2  plectin isoform X13

    UniProtKB/TrEMBL
    A0A8C8LKA4
    Related
    ENSOTSP00005010853.2, ENSOTST00005011970.2
    Conserved Domains (5) summary
    PTZ00121
    Location:1285 → 2078
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4034 → 4070
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:616 → 805
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1118 → 1292
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
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