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LOC112215628 dnaJ homolog subfamily B member 6 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112215628, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112215628
Gene description
dnaJ homolog subfamily B member 6
See related
Ensembl:ENSOTSG00005044819
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112215628 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
14
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG16 NC_056444.1 (38412559..38477552, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 16 NC_037112.1 (26561919..26622720, complement)

Linkage Group LG16 - NC_056444.1Genomic Context describing neighboring genes Neighboring gene condensin-2 complex subunit G2 Neighboring gene receptor-type tyrosine-protein phosphatase N2-like Neighboring gene uncharacterized LOC112215627 Neighboring gene ubiquitin-protein ligase E3C Neighboring gene motor neuron and pancreas homeobox protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056444.1 Reference Otsh_v2.0 Primary Assembly

    Range
    38412559..38477552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042299144.1 → XP_042155078.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C8MKQ5
    Conserved Domains (2) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional
    cl28922
    Location:215 → 291
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_024374809.2 → XP_024230577.1  dnaJ homolog subfamily B member 6 isoform X2

    Related
    ENSOTSP00005112981.1, ENSOTST00005166718.1
    Conserved Domains (1) summary
    cl28246
    Location:4 → 131
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_024374807.2 → XP_024230575.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C8MKQ5
    Related
    ENSOTSP00005096610.1, ENSOTST00005104621.2
    Conserved Domains (2) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional
    cl28922
    Location:215 → 291
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. XM_042299145.1 → XP_042155079.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C8MKQ5
    Conserved Domains (2) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional
    cl28922
    Location:215 → 291
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  5. XM_024374808.2 → XP_024230576.1  dnaJ homolog subfamily B member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C8MKQ5
    Conserved Domains (2) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional
    cl28922
    Location:215 → 291
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  6. XM_024374815.2 → XP_024230583.1  dnaJ homolog subfamily B member 6 isoform X6

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional

  7. XM_024374814.2 → XP_024230582.1  dnaJ homolog subfamily B member 6 isoform X6

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional

  8. XM_024374812.2 → XP_024230580.1  dnaJ homolog subfamily B member 6 isoform X5

    Conserved Domains (1) summary
    cl28246
    Location:4 → 131
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  9. XM_042299146.1 → XP_042155080.1  dnaJ homolog subfamily B member 6 isoform X6

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional

  10. XM_024374811.2 → XP_024230579.1  dnaJ homolog subfamily B member 6 isoform X4

    Conserved Domains (1) summary
    cl28246
    Location:4 → 131
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  11. XM_024374810.2 → XP_024230578.1  dnaJ homolog subfamily B member 6 isoform X3

    Related
    ENSOTSP00005139363.1, ENSOTST00005123306.1
    Conserved Domains (1) summary
    cl28246
    Location:4 → 131
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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