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wdr5 WD repeat domain 5 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162885, updated on 10-Jul-2024

Summary

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Gene symbol
wdr5
Gene description
WD repeat domain 5
See related
EnsemblRapid:ENSOMEG00005004203
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See wdr5 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG12 NC_050523.1 (20384566..20391302, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096103.1 (20384566..20392358, complement)

Linkage Group LG12 - NC_050523.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene retinoid X receptor, alpha a Neighboring gene bromodomain-containing protein 3 Neighboring gene vav 2 guanine nucleotide exchange factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050523.1 Reference ASM292280v2 Primary Assembly

    Range
    20384566..20391302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024298841.2 → XP_024154609.1  WD repeat-containing protein 5

    UniProtKB/TrEMBL
    A0A3B3DTX6
    Related
    ENSOMEP00005007815.1, ENSOMET00005008979.1
    Conserved Domains (2) summary
    cd00200
    Location:37 → 331
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:48 → 85
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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