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LOC112162575 probable C-mannosyltransferase DPY19L4 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162575, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112162575
Gene description
probable C-mannosyltransferase DPY19L4
See related
EnsemblRapid:ENSOMEG00005018422
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
dpy19l4
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Genomic context

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See LOC112162575 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG11 NC_050522.1 (13967932..13979445)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096076.1 (14160880..14172382, complement)

Linkage Group LG11 - NC_050522.1Genomic Context describing neighboring genes Neighboring gene lysine-specific histone demethylase 1B Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene integrator complex subunit 8 Neighboring gene T-cell differentiation antigen CD6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L4
Names
dpy-19 like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050522.1 Reference ASM292280v2 Primary Assembly

    Range
    13967932..13979445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024298392.2 → XP_024154160.1  probable C-mannosyltransferase DPY19L4 isoform X1

    UniProtKB/TrEMBL
    A0A834F9U6
    Conserved Domains (1) summary
    pfam10034
    Location:94 → 748
    Dpy19; Q-cell neuroblast polarisation

  2. XM_024298399.2 → XP_024154167.1  probable C-mannosyltransferase DPY19L4 isoform X2

    UniProtKB/TrEMBL
    A0A3B3CGQ9, A0A834F9U6
    Related
    ENSOMEP00005041320.1, ENSOMET00005046526.1
    Conserved Domains (2) summary
    pfam07133
    Location:7 → 69
    Merozoite_SPAM; Merozoite surface protein (SPAM)
    pfam10034
    Location:91 → 745
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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