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hs3st1l1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162216, updated on 10-Jul-2024

Summary

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Gene symbol
hs3st1l1
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1
See related
EnsemblRapid:ENSOMEG00005011680
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See hs3st1l1 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (8523662..8565940, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (1421205..1463589, complement)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene homeobox protein vent1 Neighboring gene uncharacterized LOC118599727 Neighboring gene deoxynucleotidyltransferase, terminal Neighboring gene B-cell linker protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    8523662..8565940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024297961.2 → XP_024153729.1  heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1

    UniProtKB/TrEMBL
    A0A3B3B5I0, A0A834FP95
    Related
    ENSOMEP00005026464.1, ENSOMET00005029152.1
    Conserved Domains (1) summary
    pfam00685
    Location:61 → 262
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_024297962.1 → XP_024153730.1  heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1

    UniProtKB/TrEMBL
    A0A3B3B5I0, A0A834FP95
    Related
    ENSOMEP00005026461.1, ENSOMET00005029149.1
    Conserved Domains (1) summary
    pfam00685
    Location:61 → 262
    Sulfotransfer_1; Sulfotransferase domain

RNA

  1. XR_004949208.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases