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rab23 RAB23, member RAS oncogene family [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162174, updated on 10-Jul-2024

Summary

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Gene symbol
rab23
Gene description
RAB23, member RAS oncogene family
See related
EnsemblRapid:ENSOMEG00005022477
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See rab23 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (23860202..23866201, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (22973668..22979658, complement)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene dystonin Neighboring gene zinc finger protein 451 Neighboring gene BCL2 associated athanogene 2 Neighboring gene DNA primase subunit 2 Neighboring gene KH domain containing, RNA binding, signal transduction associated 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    23860202..23866201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024297881.2 → XP_024153649.1  ras-related protein Rab-23

    UniProtKB/TrEMBL
    A0A3B3B6P8, A0A3B3CXB2
    Conserved Domains (1) summary
    cl38936
    Location:22 → 169
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_024297880.2 → XP_024153648.1  ras-related protein Rab-23

    UniProtKB/TrEMBL
    A0A3B3B6P8, A0A3B3CXB2
    Related
    ENSOMEP00005047090.1, ENSOMET00005055537.1
    Conserved Domains (1) summary
    cl38936
    Location:22 → 169
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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