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zgc:101663 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112159708, updated on 10-Jul-2024

Summary

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Gene symbol
zgc:101663
Gene description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
See related
EnsemblRapid:ENSOMEG00005029103
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See zgc:101663 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (155033..172577, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (5622453..5639991, complement)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 3b Neighboring gene cyclin Q Neighboring gene adaptor related protein complex 4 subunit beta 1 Neighboring gene selenophosphate synthetase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    155033..172577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024293943.2 → XP_024149711.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A3B3BX39, A0A834EVC6
    Related
    ENSOMEP00005055545.1, ENSOMET00005069939.1
    Conserved Domains (1) summary
    pfam04666
    Location:68 → 312
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  2. XM_024293944.2 → XP_024149712.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A3B3BX39, A0A834EVC6
    Conserved Domains (1) summary
    pfam04666
    Location:68 → 312
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases