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dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112158615, updated on 10-Jul-2024

Summary

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Gene symbol
dpm1
Gene description
dolichyl-phosphate mannosyltransferase subunit 1, catalytic
See related
EnsemblRapid:ENSOMEG00005000217
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See dpm1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (30292428..30298356, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (5060879..5066736, complement)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene par-6 partitioning defective 6 homolog beta (C. elegans) Neighboring gene activity-dependent neuroprotector homeobox b Neighboring gene collagen alpha-1(XX) chain Neighboring gene deoxyribonuclease I-like 1 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ribosomal protein L10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate beta-D-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dolichol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichol-phosphate mannosyltransferase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    30292428..30298356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024292045.2 → XP_024147813.1  dolichol-phosphate mannosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A3B3DF72
    Related
    ENSOMEP00005000358.1, ENSOMET00005000421.1
    Conserved Domains (1) summary
    PLN02726
    Location:8 → 250
    PLN02726; dolichyl-phosphate beta-D-mannosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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