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hbs1l HBS1-like translational GTPase [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157955, updated on 10-Jul-2024

Summary

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Gene symbol
hbs1l
Gene description
HBS1-like translational GTPase
See related
EnsemblRapid:ENSOMEG00005020733
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See hbs1l in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
20
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (14049591..14067902, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (10657855..10676137)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 1 Neighboring gene aldehyde dehydrogenase 8 family, member A1 Neighboring gene v-myb avian myeloblastosis viral oncogene homolog Neighboring gene cAMP-specific 3',5'-cyclic phosphodiesterase 7B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HBS1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    14049591..14067902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291076.2 → XP_024146844.1  HBS1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3CB53, A0A834BRR5
    Related
    ENSOMEP00005045780.1, ENSOMET00005052565.1
    Conserved Domains (3) summary
    COG5256
    Location:272 → 700
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    pfam08938
    Location:72 → 130
    HBS1_N; HBS1 N-terminus
    cl25751
    Location:46 → 276
    DUF4045; Domain of unknown function (DUF4045)

  2. XM_024291077.2 → XP_024146845.1  HBS1-like protein isoform X2

    Conserved Domains (1) summary
    pfam08938
    Location:72 → 130
    HBS1_N; HBS1 N-terminus
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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