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med23 mediator complex subunit 23 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157897, updated on 10-Jul-2024

Summary

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Gene symbol
med23
Gene description
mediator complex subunit 23
See related
EnsemblRapid:ENSOMEG00005007061
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See med23 in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
35
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (16867843..16997192, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (8833939..8874741)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112158140 Neighboring gene A-kinase anchor protein 7 Neighboring gene interleukin 20 receptor, alpha Neighboring gene EH-domain containing 3 Neighboring gene C-C motif chemokine 22 Neighboring gene eotaxin-like Neighboring gene extensin-like Neighboring gene C-C motif chemokine 22-like Neighboring gene C-C motif chemokine 22 Neighboring gene C-C motif chemokine 13-like Neighboring gene uncharacterized LOC118598143 Neighboring gene stum, mechanosensory transduction mediator homolog Neighboring gene coenzyme Q8A, genome duplicate a Neighboring gene inositol-trisphosphate 3-kinase B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    16867843..16997192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036210492.1 → XP_036066385.1  mediator of RNA polymerase II transcription subunit 23

    UniProtKB/TrEMBL
    A0A3B3DVC3
    Related
    ENSOMEP00005016223.1, ENSOMET00005017886.1
    Conserved Domains (1) summary
    pfam11573
    Location:151 → 1452
    Med23; Mediator complex subunit 23
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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