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gspt1l G1 to S phase transition 1, like [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157642, updated on 10-Jul-2024

Summary

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Gene symbol
gspt1l
Gene description
G1 to S phase transition 1, like
See related
EnsemblRapid:ENSOMEG00005003823
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See gspt1l in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (23647610..23668198, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (1884273..1904861, complement)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene amine oxidase copper containing 2 Neighboring gene G protein pathway suppressor 1 Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 Neighboring gene uncharacterized LOC112141964

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation release factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of translation release factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic peptide chain release factor GTP-binding subunit ERF3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    23647610..23668198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024290498.1 → XP_024146266.1  eukaryotic peptide chain release factor GTP-binding subunit ERF3A

    UniProtKB/TrEMBL
    A0A3B3CYI6, A0A3B3CZ90
    Related
    ENSOMEP00005010092.1, ENSOMET00005011430.1
    Conserved Domains (1) summary
    COG5256
    Location:146 → 568
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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